SMTL ID : 5n4p.1

Human myelin P2, mutant I52T

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 26 residues within 4Å: Chain A: F.18, Y.21, M.22, L.25, V.27, T.31, G.35, A.38, P.40, V.42, T.55, S.57, F.59, K.60, T.62, T.76, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 Ligands: VCA.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.18, A:L.25, A:P.40, A:T.55, A:A.77, A:D.78 Hydrogen bonds: A:Y.130 Water bridges: A:R.108, A:R.128, A:R.128 Salt bridges: A:R.108, A:R.128

1 x MLT: D-MALATE(Non-covalent)

MLT.2: 6 residues within 4Å: Chain A: K.11, L.37, A.38, K.39, S.57, T.58 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.11, A:K.39, A:K.39, A:T.58, A:T.58 Water bridges: A:F.59 Salt bridges: A:K.11, A:K.39

1 x VCA: VACCENIC ACID(Non-covalent)

VCA.3: 24 residues within 4Å: Chain A: F.18, Y.21, M.22, L.25, V.27, T.31, G.35, A.38, P.40, V.42, T.55, S.57, F.59, K.60, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 Ligands: PLM.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.18, A:T.31, A:F.59, A:A.77, A:D.78 Hydrogen bonds: A:Y.130 Water bridges: A:R.108, A:R.108, A:R.128, A:R.128 Salt bridges: A:R.108, A:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruskamo, S. et al., Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2. Sci Rep (2017)

Release Date

2017-08-09

Peptides

Myelin P2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myelin P2 protein