SMTL ID : 5n53.1

Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with N-(3-chloro-4-methoxyphenyl) acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x 8NB: ~{N}-(3-chloranyl-4-methoxy-phenyl)ethanamide(Non-covalent)

8NB.1: 8 residues within 4Å: Chain A: G.53, Y.75, P.77, T.108, P.109, L.111, S.113, T.114 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.77, A:T.108, A:P.109, A:T.114 8NB.2: 9 residues within 4Å: Chain B: L.52, G.53, Y.75, P.77, T.108, P.109, L.111, S.113, T.114 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.77, B:T.108, B:P.109, B:L.111, B:T.114 Water bridges: B:D.76 Halogen bonds: B:Y.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unterlass, J.E. et al., Validating and enabling phosphoglycerate dehydrogenase (PHGDH) as a target for fragment-based drug discovery in PHGDH-amplified breast cancer. Oncotarget (2018)

Release Date

2017-04-05

Peptides

D-3-phosphoglycerate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

D-3-phosphoglycerate dehydrogenase

Related Entries With Identical Sequence