SMTL ID : 5n5e.1 (2 other biounits)

Crystal structure of encapsulated ferritin domain from Pyrococcus furiosus PFC_05175

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-10-mer

Ligands

10 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: E.32, E.62, H.65 Chain F: Y.39, V.58, E.62 Ligands: FE.2 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: A:E.32, A:E.62, A:H.65, F:E.62, H2O.1 FE.2: 7 residues within 4Å: Chain A: Y.39, V.58, E.62 Chain F: E.32, E.62, H.65 Ligands: FE.1 5 PLIP interactions: 1 interactions with chain A, 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: A:E.62, F:E.32, F:E.62, F:H.65, H2O.2 FE.3: 6 residues within 4Å: Chain B: E.32, E.62, H.65 Chain D: Y.39, V.58, E.62 5 PLIP interactions: 1 interactions with chain D, 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: D:E.62, B:E.32, B:E.62, B:H.65, H2O.4 FE.4: 6 residues within 4Å: Chain B: Y.39, V.58, E.62 Chain D: E.32, E.62, H.65 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: D:E.32, D:E.62, D:H.65, B:E.62, H2O.4 FE.5: 6 residues within 4Å: Chain C: E.32, E.62, H.65 Chain E: Y.39, V.58, E.62 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: C:E.32, C:E.62, C:H.65, E:E.62, H2O.10 FE.6: 6 residues within 4Å: Chain C: Y.39, V.58, E.62 Chain E: E.32, E.62, H.65 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: C:E.62, E:E.32, E:E.62, E:H.65, H2O.6 FE.7: 6 residues within 4Å: Chain G: E.32, E.62, H.65 Chain I: Y.39, V.58, E.62 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: G:E.32, G:E.62, G:H.65, I:E.62, H2O.15 FE.8: 6 residues within 4Å: Chain G: Y.39, V.58, E.62 Chain I: E.32, E.62, H.65 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: I:E.32, I:E.62, I:H.65, G:E.62, H2O.15 FE.9: 6 residues within 4Å: Chain H: E.32, E.62, H.65 Chain J: Y.39, V.58, E.62 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: H:E.32, H:E.62, H:H.65, J:E.62, H2O.21 FE.10: 6 residues within 4Å: Chain H: Y.39, V.58, E.62 Chain J: E.32, E.62, H.65 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: J:E.32, J:E.62, J:H.65, H:E.62, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, D. et al., Conservation of the structural and functional architecture of encapsulated ferritins in bacteria and archaea. Biochem.J. (2019)

Release Date

2018-01-24

Peptides

PFC_05175: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
e

B
C

C
D

D
H

E
J

F
K

G
P

H
Q

I
R

J
d

PFC_05175

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