SMTL ID : 5n6m.1

Structure of the membrane integral lipoprotein N-acyltransferase Lnt from P. aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: Y.500 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.2: 3 residues within 4Å: Chain A: R.266, Y.302 Ligands: FLC.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.266, A:R.266 GOL.3: 8 residues within 4Å: Chain A: V.185, G.186, Y.500, R.501, V.502, P.504, L.505 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.186, A:Y.500

1 x FLC: CITRATE ANION(Non-covalent)

FLC.4: 4 residues within 4Å: Chain A: R.266, R.273, A.305 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.266 Salt bridges: A:R.266, A:R.273, A:R.273

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.5: 6 residues within 4Å: Chain A: W.29, H.32, W.76, W.79, W.80, A.117 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.76, A:W.76, A:W.79, A:W.80, A:A.117 Salt bridges: A:H.32 OLC.6: 4 residues within 4Å: Chain A: R.67, L.202, V.203, P.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.67 OLC.7: 4 residues within 4Å: Chain A: L.362, Q.363, D.364, L.365 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.363, A:D.364, A:D.364, A:L.365 OLC.8: 7 residues within 4Å: Chain A: L.182, V.185, P.225, W.237, P.496, Q.499, Y.500 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.182, A:P.225 Hydrogen bonds: A:Y.500 OLC.9: 5 residues within 4Å: Chain A: F.49, D.50, Y.51, W.52, P.53 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.52, A:P.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiktor, M. et al., Structural insights into the mechanism of the membrane integral N-acyltransferase step in bacterial lipoprotein synthesis. Nat Commun (2017)

Release Date

2017-07-12

Peptides

Apolipoprotein N-acyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Apolipoprotein N-acyltransferase

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