SMTL ID : 5n6o.2 (1 other biounit)

Wild type human Rac1-GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.10, G.11, A.12, V.13, G.14, K.15, T.16, C.17, F.27, I.32, K.115, D.117, L.118, S.157, A.158, L.159 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.10, A:A.12, A:V.13, A:G.14, A:K.15, A:T.16, A:T.16, A:C.17, A:K.115, A:K.115, A:A.158, A:L.159 Water bridges: A:K.15, A:T.16, A:T.16 Salt bridges: A:K.15, A:D.117 pi-Stacking: A:F.27, A:F.27

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.16 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.16, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrandez, Y. et al., Allosteric inhibition of the guanine nucleotide exchange factor DOCK5 by a small molecule. Sci Rep (2017)

Release Date

2017-12-27

Peptides

Ras-related C3 botulinum toxin substrate 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ras-related C3 botulinum toxin substrate 1

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