SMTL ID : 5n6q.1

Xenobiotic reductase A (XenA) from Pseudomonas putida in complex with 2-phenylacrylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 8OZ: 2-Phenylacrylic acid(Non-covalent)

8OZ.1: 8 residues within 4Å: Chain A: C.25, Y.27, I.66, H.178, H.181, Y.183 Chain B: W.358 Ligands: FMN.6 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.66, B:W.358 Hydrogen bonds: A:Y.183 Salt bridges: A:H.178, A:H.181 8OZ.8: 8 residues within 4Å: Chain A: W.358 Chain B: C.25, Y.27, I.66, H.178, H.181, Y.183 Ligands: FMN.7 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.66, A:W.358 Hydrogen bonds: B:Y.183 Water bridges: B:K.106 Salt bridges: B:H.178, B:H.181

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: K.340 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: F.189, E.191, R.207, E.247 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: L.296 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: K.340 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: L.296 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: E.191, R.207, E.247 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: H.181, R.231, S.266, V.267, M.283, A.301, W.302 Ligands: FMN.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.301

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.6: 19 residues within 4Å: Chain A: P.22, P.23, M.24, C.25, E.56, A.57, Q.99, H.178, H.181, R.231, A.301, W.302, G.303, V.324, G.325, R.326 Chain B: W.358 Ligands: 8OZ.1, GOL.5 21 PLIP interactions: 19 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:M.24, A:R.326, B:W.358, B:W.358 Hydrogen bonds: A:P.23, A:C.25, A:A.57, A:Q.99, A:Q.99, A:H.181, A:R.231, A:R.231, A:W.302, A:G.303, A:G.325, A:R.326 Water bridges: A:F.304, A:R.326, A:R.326, A:A.327 Salt bridges: A:R.326 FMN.7: 17 residues within 4Å: Chain A: W.358 Chain B: P.22, P.23, M.24, C.25, A.57, Q.99, H.178, H.181, R.231, A.301, W.302, G.303, V.324, G.325, R.326 Ligands: 8OZ.8 22 PLIP interactions: 21 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:M.24, B:R.326, A:W.358 Hydrogen bonds: B:P.23, B:C.25, B:A.57, B:Q.99, B:Q.99, B:H.181, B:R.231, B:R.231, B:W.302, B:G.303, B:G.325, B:R.326 Water bridges: B:F.304, B:F.304, B:G.305, B:G.305, B:R.326, B:R.326 Salt bridges: B:R.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waller, J. et al., Structural insights into the ene-reductase synthesis of profens. Org. Biomol. Chem. (2017)

Release Date

2017-05-17

Peptides

NADH:flavin oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NADH:flavin oxidoreductase