SMTL ID : 5n7n.1 (3 other biounits)

CRYSTAL STRUCTURE OF CATHEPSIN D ZYMOGEN FROM THE TICK IXODES RICINUS (IRCD1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.73, K.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.74 SO4.2: 2 residues within 4Å: Chain A: R.95, G.158 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.95 SO4.3: 2 residues within 4Å: Chain A: R.116, K.121 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.116, A:K.121

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.4: 5 residues within 4Å: Chain A: L.35, Y.101, S.103, G.104, G.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanova, I. et al., Novel Structural Mechanism of Allosteric Regulation of Aspartic Peptidases via an Evolutionarily Conserved Exosite. Cell Chem Biol (2018)

Release Date

2017-12-27

Peptides

Putative cathepsin d: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative cathepsin d

Related Entries With Identical Sequence