SMTL ID : 5n8c.2 (1 other biounit)

Crystal structure of Pseudomonas aeruginosa LpxC complexed with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.79, H.238, D.242 Ligands: 8Q8.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.79, A:H.238, A:D.242, A:D.242 ZN.2: 2 residues within 4Å: Chain A: E.199 Ligands: 8Q8.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.199

1 x 8Q8: (2~{S})-3-azanyl-2-[[(1~{R})-5-[2-[4-[[2-(hydroxymethyl)imidazol-1-yl]methyl]phenyl]ethynyl]-2,3-dihydro-1~{H}-inden-1-yl]amino]-3-methyl-~{N}-oxidanyl-butanamide(Non-covalent)

8Q8.3: 23 residues within 4Å: Chain A: L.19, H.20, M.63, E.78, H.79, T.191, F.192, M.195, I.198, E.199, L.201, R.202, A.207, G.210, S.211, A.215, V.217, H.238, K.239, D.242, H.265 Ligands: ZN.1, ZN.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.19, A:T.191, A:F.192, A:I.198, A:I.198, A:L.201, A:A.207, A:A.215, A:V.217 Hydrogen bonds: A:M.63, A:T.191, A:T.191 Water bridges: A:K.239

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: G.264, A.266, L.267 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structure-based discovery of LpxC inhibitors. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-03-29

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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