SMTL ID : 5n8f.1

Serial Cu nitrite reductase structures at elevated cryogenic temperature, 240K. Dataset 1.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

homo-trimer

Ligands

6 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.89, C.130, H.139, M.144 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.89, A:C.130, A:H.139 CU.2: 4 residues within 4Å: Chain A: D.92, H.94, H.129 Chain C: H.300 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:H.94, A:H.129, C:H.300, H2O.8, H2O.9 CU.9: 4 residues within 4Å: Chain B: H.89, C.130, H.139, M.144 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.89, B:C.130, B:H.139 CU.10: 4 residues within 4Å: Chain A: H.300 Chain B: D.92, H.94, H.129 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.94, B:H.129, A:H.300, H2O.20, H2O.20 CU.17: 4 residues within 4Å: Chain C: H.89, C.130, H.139, M.144 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.89, C:C.130, C:H.139 CU.18: 4 residues within 4Å: Chain B: H.300 Chain C: D.92, H.94, H.129 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:H.94, C:H.129, B:H.300, H2O.31, H2O.32

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.222, G.223, H.313, K.315 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: R.290, L.324 Chain B: K.119, T.121 Ligands: SO4.8 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: P.152, R.153, D.154 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.8, R.117 Chain C: V.328 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: K.181, D.182, E.183, K.188 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain A: R.290 Chain B: T.121, K.122, R.265 Ligands: SO4.4 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: T.222, G.223, H.313, K.315 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: R.290, L.324 Chain C: K.119, T.121 Ligands: SO4.16 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: P.152, R.153, D.154 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain A: V.328 Chain B: R.8, R.117 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: K.181, D.182, E.183, K.188 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain B: R.290 Chain C: T.121, K.122, R.265 Ligands: SO4.12 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: T.222, G.223, H.313, K.315 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain A: K.119, T.121 Chain C: R.290, L.324 Ligands: SO4.24 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: P.152, R.153, D.154 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: V.328 Chain C: R.8, R.117 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: K.181, D.182, E.183, K.188 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain A: T.121, K.122, R.265 Chain C: R.290 Ligands: SO4.20 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sen, K. et al., Active-site protein dynamics and solvent accessibility in native Achromobacter cycloclastes copper nitrite reductase. IUCrJ (2017)

Release Date

2017-07-26

Peptides

Copper-containing nitrite reductase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Copper-containing nitrite reductase

Related Entries With Identical Sequence