SMTL ID : 5n9r.1 (1 other biounit)

Crystal structure of USP7 in complex with a potent, selective and reversible small-molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.14, R.57, G.70, T.71, K.72, K.73 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.14, A:K.72, A:K.73 Water bridges: A:G.70, A:L.74 Salt bridges: A:R.57

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: S.125, Y.126, I.127, S.136, D.137, R.138, K.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.136 Water bridges: A:S.125, A:G.187

1 x 8RN: 7-bromanyl-3-[[4-oxidanyl-1-[(3~{R})-3-phenylbutanoyl]piperidin-4-yl]methyl]thieno[3,2-d]pyrimidin-4-one(Non-covalent)

8RN.3: 16 residues within 4Å: Chain A: Y.19, D.90, V.91, Q.92, Q.146, L.201, M.202, R.203, F.204, M.205, K.215, H.251, N.255, H.256, Y.260, Y.309 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.91, A:R.203, A:F.204, A:F.204, A:K.215, A:H.251, A:Y.309, A:Y.309 Hydrogen bonds: A:V.91, A:Q.92, A:R.203, A:F.204 pi-Cation interactions: A:K.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gavory, G. et al., Discovery and characterization of highly potent and selective allosteric USP7 inhibitors. Nat. Chem. Biol. (2018)

Release Date

2017-12-06

Peptides

Ubiquitin carboxyl-terminal hydrolase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase 7

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