SMTL ID : 5n9t.2 (1 other biounit)

Crystal structure of USP7 in complex with a potent, selective and reversible small-molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.69, T.70, K.71, K.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.69, A:K.71, A:K.72 Water bridges: A:T.70, A:L.73 SO4.2: 2 residues within 4Å: Chain A: T.283, K.284 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.284

1 x 8QQ: 3-[4-(aminomethyl)phenyl]-2-methyl-6-[[4-oxidanyl-1-[(3~{R})-4,4,4-tris(fluoranyl)-3-phenyl-butanoyl]piperidin-4-yl]methyl]pyrazolo[4,3-d]pyrimidin-7-one(Non-covalent)

8QQ.3: 18 residues within 4Å: Chain A: Y.18, D.89, V.90, Q.91, Q.145, Q.199, L.200, M.201, R.202, F.203, M.204, K.214, H.250, D.253, N.254, H.255, Y.259, Y.308 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.145, A:R.202, A:F.203, A:K.214, A:H.250, A:Y.308, A:Y.308 Hydrogen bonds: A:D.89, A:V.90, A:Q.91, A:Q.145, A:R.202, A:F.203, A:Y.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gavory, G. et al., Discovery and characterization of highly potent and selective allosteric USP7 inhibitors. Nat. Chem. Biol. (2018)

Release Date

2017-12-06

Peptides

Ubiquitin carboxyl-terminal hydrolase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ubiquitin carboxyl-terminal hydrolase 7

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