SMTL ID : 5na2.1

Crystal structure of the full-length Feline Immunodeficiency Virus capsid protein unveils original features

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: Q.3, T.4 No protein-ligand interaction detected (PLIP) GOL.2: 1 residues within 4Å: Chain A: T.170 No protein-ligand interaction detected (PLIP) GOL.3: 5 residues within 4Å: Chain A: D.15, K.17, M.18, I.21, F.42 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: T.105, Q.106 Chain B: H.196 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.106, A:Q.106 Water bridges: A:T.105, A:E.107 GOL.5: 3 residues within 4Å: Chain A: E.70, K.73, Q.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.70, A:E.70 Water bridges: A:Q.74 GOL.6: 2 residues within 4Å: Chain B: T.202, L.203 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.203 Water bridges: B:S.201, B:E.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Folio, C. et al., Crystal Structure of the Full-Length Feline Immunodeficiency Virus Capsid Protein Shows an N-Terminal beta-Hairpin in the Absence of N-Terminal Proline. Viruses (2017)

Release Date

2017-11-15

Peptides

Capsid protein (p24): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein (p24)