SMTL ID : 5naf.1 (3 other biounits)

Co-crystal structure of an MeCP2 peptide with TBLR1 WD40 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: N.270, C.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.271, A:D.274 Water bridges: A:D.274 GOL.2: 2 residues within 4Å: Chain A: Q.234, D.269 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.234, A:Q.234 GOL.3: 7 residues within 4Å: Chain A: W.204, Q.205, W.245, D.246, P.247, T.248, G.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.204, A:W.245 GOL.4: 7 residues within 4Å: Chain A: F.194, H.195, S.196, D.216, C.218, H.220, Q.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.196, A:D.216, A:Q.234 Water bridges: A:T.232 GOL.5: 5 residues within 4Å: Chain A: C.322, I.323, H.324, T.325 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.325 Water bridges: A:R.313 GOL.6: 3 residues within 4Å: Chain A: F.308, E.331, P.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.331 GOL.7: 5 residues within 4Å: Chain A: I.323, H.324, T.361, G.362 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.324, A:G.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kruusvee, V. et al., Structure of the MeCP2-TBLR1 complex reveals a molecular basis for Rett syndrome and related disorders. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-03-29

Peptides

F-box-like/WD repeat-containing protein TBL1XR1: A
Methyl-CpG-binding protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

F-box-like/WD repeat-containing protein TBL1XR1

Methyl-CpG-binding protein 2

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