SMTL ID : 5nax.1

Crystal structures of homooligomers of the non-collagenous domains of collagen type IV. alpha121NC1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

hetero-4-2-mer

Ligands

11 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: M.60, A.74, S.75, R.76, D.78, G.178 Chain D: R.179 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: N.66 Chain B: Y.189 Chain D: Y.185, A.186 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain B: M.60, A.74, S.75, R.76, N.77, D.78 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: F.64, N.66, N.72 Chain C: Y.188 Chain E: Y.184, A.185 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: M.60, A.74, S.75, R.76, D.78 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain C: Y.184, A.185 Chain E: Y.188 Chain F: N.66 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: R.179 Chain D: A.74, S.75, R.76, D.78, G.178 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain B: Y.185, A.186 Chain D: Y.189 Chain E: Y.64, N.66, Y.72 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain E: M.60, A.74, S.75, R.76, D.78 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain F: M.60, A.74, R.76, D.78, G.178 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: Y.185, A.186 Chain D: N.66 Chain F: Y.189 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Casino, P. et al., Structures of collagen IV globular domains: insight into associated pathologies, folding and network assembly. IUCrJ (2018)

Release Date

2018-09-12

Peptides

Collagen alpha-1(IV) chain: ABDF
Collagen alpha-2(IV) chain: CE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

F
F

C
C

E
E

Collagen alpha-1(IV) chain

Collagen alpha-2(IV) chain

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