SMTL ID : 5nb7.1

Complement factor D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: A.217, S.218, Y.219, A.220, A.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.221 DMS.2: 5 residues within 4Å: Chain A: D.114, D.116, R.151, E.166, R.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.151 Salt bridges: A:D.114, A:D.116, A:E.166

1 x 8NQ: 1-[2-[(1~{R},3~{S},5~{R})-3-[(6-bromanylpyridin-2-yl)carbamoyl]-2-azabicyclo[3.1.0]hexan-2-yl]-2-oxidanylidene-ethyl]indazole-3-carboxamide(Non-covalent)

8NQ.3: 22 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, C.42, E.44, W.128, G.129, I.130, R.137, S.178, C.179, K.180, G.181, S.183, V.197, T.198, S.199, G.200, S.201, R.202, C.204 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.130, A:R.137, A:K.180, A:K.180, A:R.202 Hydrogen bonds: A:L.25, A:G.181, A:S.183, A:T.198, A:R.202 Halogen bonds: A:W.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorthiois, E. et al., Discovery of Highly Potent and Selective Small-Molecule Reversible Factor D Inhibitors Demonstrating Alternative Complement Pathway Inhibition in Vivo. J. Med. Chem. (2017)

Release Date

2017-06-28

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Complement factor D

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