SMTL ID : 5nbd.1

PglK flippase in complex with inhibitory nanobody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-2-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 7 residues within 4Å: Chain A: E.383, S.384, G.385, G.387, K.388, S.389, T.390 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.385, A:C.386, A:G.387, A:K.388, A:S.389, A:S.389 Salt bridges: A:H.541 ADP.2: 9 residues within 4Å: Chain B: T.125, Y.358, K.361, G.385, C.386, G.387, K.388, S.389, T.390 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.125, B:G.385, B:G.385, B:G.387, B:K.388, B:K.388, B:S.389, B:T.390, B:T.390 Salt bridges: B:K.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez, C. et al., Structural basis of inhibition of lipid-linked oligosaccharide flippase PglK by a conformational nanobody. Sci Rep (2017)

Release Date

2017-05-03

Peptides

WlaB protein: AB
Nanobody: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

WlaB protein

Nanobody

Related Entries With Identical Sequence