SMTL ID : 5nbu.1

Crystal structure of native alpha-1-antitrypsin with seven stabilising mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: T.10, A.14, H.252, I.255, L.259, I.358, K.363, A.364, P.365 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.252, A:K.363 GOL.2: 4 residues within 4Å: Chain A: H.214, K.216, S.219, D.239 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.219

2 x OXM: OXAMIC ACID(Non-covalent)

OXM.3: 2 residues within 4Å: Chain A: D.132, E.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.132 Water bridges: A:E.135 OXM.4: 7 residues within 4Å: Chain A: W.177, E.178, R.179, F.210, M.225, K.226, R.264 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.179, A:K.226, A:K.226 Water bridges: A:E.178, A:R.206, A:R.206, A:R.264, A:R.264, A:R.264 Salt bridges: A:R.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, D.J.D. et al., CRYSTAL STRUCTURE OF THE Z VARIANT OF ALPHA-1-ANTITRYPSIN REVEALS STRUCTURAL AND DYNAMICAL CHANGES AND SUPPORTS A C-TERMINAL DOMAIN SWAP MECHANISM OF POLYMERIZATION. To Be Published

Release Date

2018-03-21

Peptides

Alpha-1-antitrypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-1-antitrypsin