SMTL ID : 5ncj.2 (1 other biounit)

GriE in complex with manganese, succinate and (2S,4R)-5-hydroxyleucine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.113, D.115, H.213 Ligands: SIN.2, HL5.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.113, A:D.115, A:H.213

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.2: 15 residues within 4Å: Chain A: K.98, N.100, K.102, W.110, H.113, V.147, F.207, H.213, G.214, S.215, R.224, L.226, I.228 Ligands: MN.1, HL5.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.110, A:I.228 Hydrogen bonds: A:N.100, A:S.215 Salt bridges: A:K.98, A:K.102, A:H.113, A:H.213, A:R.224

1 x HL5: (2S,4R)-5-hydroxyleucine(Non-covalent)

HL5.3: 16 residues within 4Å: Chain A: Y.62, Q.96, K.98, H.113, D.115, V.118, W.119, H.172, V.173, D.174, P.175, R.245, V.249, I.250 Ligands: MN.1, SIN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.118 Hydrogen bonds: A:Y.62, A:Q.96, A:Q.96, A:K.98, A:W.119, A:V.173 Water bridges: A:D.115 Salt bridges: A:R.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lukat, P. et al., Biosynthesis of methyl-proline containing griselimycins, natural products with anti-tuberculosis activity. Chem Sci (2017)

Release Date

2017-10-04

Peptides

Leucine hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Leucine hydroxylase

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