- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x A- A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3')(Non-covalent)
- 3 x U- U: RNA (5'-R(P*UP*U)-3')(Non-covalent)
U-U.2: 16 residues within 4Å:- Chain A: Q.8, Q.41, F.42, Y.55, K.56, H.57
- Chain B: F.42, Y.55, H.57
- Chain D: Q.8, Q.41, F.42, K.56, H.57
- Ligands: U-U.9, U-U.16
Protein-ligand interaction information (PLIP) not availableU-U.9: 16 residues within 4Å:- Chain C: Q.8, Q.41, F.42, Y.55, K.56, H.57
- Chain D: F.42, Y.55, H.57
- Chain F: Q.8, Q.41, F.42, K.56, H.57
- Ligands: U-U.2, U-U.16
Protein-ligand interaction information (PLIP) not availableU-U.16: 16 residues within 4Å:- Chain B: Q.8, Q.41, F.42, K.56, H.57
- Chain E: Q.8, Q.41, F.42, Y.55, K.56, H.57
- Chain F: F.42, Y.55, H.57
- Ligands: U-U.2, U-U.9
Protein-ligand interaction information (PLIP) not available- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: S.23, Y.25, K.31, Q.33, V.63
Ligand excluded by PLIPSO4.4: 3 residues within 4Å:- Chain A: R.16, R.17, R.19
Ligand excluded by PLIPSO4.5: 5 residues within 4Å:- Chain A: P.67, V.68
- Chain B: K.47, V.50, S.51
Ligand excluded by PLIPSO4.6: 3 residues within 4Å:- Chain B: S.23, Y.25, K.31
Ligand excluded by PLIPSO4.7: 3 residues within 4Å:- Chain B: P.10, N.13, R.17
Ligand excluded by PLIPSO4.10: 5 residues within 4Å:- Chain C: S.23, Y.25, K.31, Q.33, V.63
Ligand excluded by PLIPSO4.11: 3 residues within 4Å:- Chain C: R.16, R.17, R.19
Ligand excluded by PLIPSO4.12: 5 residues within 4Å:- Chain C: P.67, V.68
- Chain D: K.47, V.50, S.51
Ligand excluded by PLIPSO4.13: 3 residues within 4Å:- Chain D: S.23, Y.25, K.31
Ligand excluded by PLIPSO4.14: 3 residues within 4Å:- Chain D: P.10, N.13, R.17
Ligand excluded by PLIPSO4.17: 5 residues within 4Å:- Chain E: S.23, Y.25, K.31, Q.33, V.63
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain E: R.16, R.17, R.19
Ligand excluded by PLIPSO4.19: 5 residues within 4Å:- Chain E: P.67, V.68
- Chain F: K.47, V.50, S.51
Ligand excluded by PLIPSO4.20: 3 residues within 4Å:- Chain F: S.23, Y.25, K.31
Ligand excluded by PLIPSO4.21: 3 residues within 4Å:- Chain F: P.10, N.13, R.17
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schulz, E.C. et al., Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq. Sci Rep (2017)
- Release Date
- 2017-10-04
- Peptides
- RNA-binding protein Hfq: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x A- A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3')(Non-covalent)
- 3 x U- U: RNA (5'-R(P*UP*U)-3')(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schulz, E.C. et al., Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq. Sci Rep (2017)
- Release Date
- 2017-10-04
- Peptides
- RNA-binding protein Hfq: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B