SMTL ID : 5nfg.1 (1 other biounit)

Structure of recombinant cardosin B from Cynara cardunculus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 11 residues within 4Å: Chain A: N.116, T.118, H.147, D.149, Q.175, G.180, K.181, A.182, V.183, N.188, N.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.175, A:Q.175, A:N.188, A:N.188, A:Q.175, A:G.180 Water bridges: A:D.149, A:D.149, A:D.149, A:N.191

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 1 residues within 4Å: Chain A: N.229 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Almeida, C.M. et al., Functional and structural characterization of synthetic cardosin B-derived rennet. Appl. Microbiol. Biotechnol. (2017)

Release Date

2017-10-11

Peptides

Procardosin-B,Procardosin-B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Procardosin-B,Procardosin-B

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