SMTL ID : 5nfq.1

Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: R.236, T.238, E.261, E.262, I.264, D.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.261 PEG.2: 5 residues within 4Å: Chain A: D.89, G.92, I.93, G.94 Ligands: EDO.8 No protein-ligand interaction detected (PLIP)

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: L.5, R.7, D.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.7 Water bridges: A:D.17, A:D.17, A:R.64 EDO.4: 4 residues within 4Å: Chain A: A.283, P.284, D.285, A.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.285, A:D.285, A:A.286 EDO.5: 5 residues within 4Å: Chain A: N.12, I.14, R.61, K.79 Ligands: PGE.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.12, A:N.12, A:R.61, A:R.61 Water bridges: A:D.78 EDO.6: 5 residues within 4Å: Chain A: R.43, H.44, M.184, E.185, E.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.43, A:H.44, A:E.185, A:E.188 EDO.7: 4 residues within 4Å: Chain A: L.247, P.254, L.257, R.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.271 EDO.8: 4 residues within 4Å: Chain A: P.11, D.89, T.90 Ligands: PEG.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.90 EDO.9: 1 residues within 4Å: Chain A: H.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.48 Water bridges: A:N.288 EDO.10: 2 residues within 4Å: Chain A: G.110, L.234 No protein-ligand interaction detected (PLIP) EDO.11: 3 residues within 4Å: Chain A: S.67, K.68, P.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.68, A:K.68, A:K.68 Water bridges: A:S.67

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 4 residues within 4Å: Chain A: P.77, W.103, S.212, P.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.212 PGE.13: 5 residues within 4Å: Chain A: D.78, G.82, F.85, L.86 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.78

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.14: 4 residues within 4Å: Chain A: G.293, F.294, A.296, H.298 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:H.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrandi, E.E. et al., New Thermophilic alpha / beta Class Epoxide Hydrolases Found in Metagenomes From Hot Environments. Front Bioeng Biotechnol (2018)

Release Date

2018-05-16

Peptides

epoxide hydrolase belonging to alpha/beta hydrolase superfamily metagenomic from Tomsk sample: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

epoxide hydrolase belonging to alpha/beta hydrolase superfamily metagenomic from Tomsk sample