SMTL ID : 5nfv.1

Crystal structure of catalytically inactive FnCas12 mutant bound to an R-loop structure containing a pre-crRNA mimic and full-length DNA target

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: D.794, R.802 Chain B: U.18, A.19 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:R.802, H2O.1, H2O.1, H2O.2, H2O.2 MG.2: 5 residues within 4Å: Chain A: L.68, S.69, V.71, Y.250, N.272 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:S.69, A:V.71, A:Y.250, A:N.272 MG.4: 1 residues within 4Å: Chain B: A.11 No protein-ligand interaction detected (PLIP)

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.3: 16 residues within 4Å: Chain A: S.14, G.666, K.669, R.757, E.760, N.761, T.887, N.889, F.890, K.891, S.892, S.893, G.894 Chain C: T.27, T.28 Chain D: C.11 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.14, A:E.760, A:F.890, A:F.890 Water bridges: A:K.669, A:K.669

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swarts, D.C. et al., Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a. Mol. Cell (2017)

Release Date

2017-06-14

Peptides

CRISPR-associated endonuclease Cpf1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CRISPR-associated endonuclease Cpf1