SMTL ID : 5ng0.1

Structure of RIP2K(L294F) with bound AMPPCP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 15 residues within 4Å: Chain A: S.29, S.33, V.36, A.49, K.51, L.83, T.99, E.100, Y.101, M.102, Q.154, N.155, L.157, D.168 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.29, A:S.33, A:K.51, A:T.99, A:E.100, A:M.102, A:Q.154 Water bridges: A:S.33, A:D.150, A:K.152, A:K.152, A:N.155, A:D.168 Salt bridges: A:K.51 ACP.3: 15 residues within 4Å: Chain B: S.29, S.33, V.36, A.49, K.51, L.83, T.99, E.100, Y.101, M.102, Q.154, N.155, L.157, D.168 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.29, B:K.51, B:T.99, B:E.100, B:M.102, B:Q.154, B:D.168, B:D.168 Water bridges: B:S.33, B:K.152, B:K.152, B:N.155, B:D.168 Salt bridges: B:K.51

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.150, D.168 Ligands: ACP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.168, A:D.168, H2O.3, H2O.7 MG.4: 2 residues within 4Å: Chain B: D.168 Ligands: ACP.3 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.168, B:D.168, H2O.9, H2O.14

1 x CO: COBALT (II) ION(Non-covalent)

CO.5: 2 residues within 4Å: Chain B: K.76, W.174 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellegrini, E. et al., Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation. PLoS ONE (2017)

Release Date

2017-06-07

Peptides

Receptor-interacting serine/threonine-protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 2