SMTL ID : 5ng2.1

Structure of RIP2K(D146N) with bound Staurosporine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x STU: STAUROSPORINE(Non-covalent)

STU.1: 17 residues within 4Å: Chain A: L.28, S.29, V.36, A.49, K.51, L.83, T.99, E.100, Y.101, M.102, G.105, S.106, N.108, Q.154, N.155, L.157, D.168 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.28, A:V.36, A:K.51, A:Y.101, A:L.157, A:L.157, A:D.168 Hydrogen bonds: A:S.29, A:T.99, A:M.102, A:S.106, A:Q.154 STU.5: 16 residues within 4Å: Chain B: L.28, S.29, V.36, A.49, K.51, L.83, T.99, E.100, Y.101, M.102, G.105, S.106, Q.154, N.155, L.157, D.168 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.28, B:L.28, B:V.36, B:K.51, B:L.83, B:L.157, B:L.157, B:D.168 Hydrogen bonds: B:S.29, B:T.99, B:M.102, B:S.106, B:Q.154

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: S.271, E.274, S.275 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.274 PO4.3: 5 residues within 4Å: Chain A: L.110, Y.117, D.119, L.124, F.162 No protein-ligand interaction detected (PLIP) PO4.4: 3 residues within 4Å: Chain A: V.120, W.122, R.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.120, A:W.122, A:W.122 Salt bridges: A:R.125 PO4.6: 3 residues within 4Å: Chain B: S.271, E.274, S.275 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.271, B:E.274, B:S.275 PO4.7: 4 residues within 4Å: Chain A: D.159, K.165 Chain B: D.159, K.165 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.165, B:K.165 Hydrogen bonds: B:D.159, B:D.159 PO4.8: 6 residues within 4Å: Chain B: T.16, I.17, P.18, H.41, D.43, W.44 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.43 Salt bridges: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellegrini, E. et al., Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation. PLoS ONE (2017)

Release Date

2017-06-07

Peptides

Receptor-interacting serine/threonine-protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 2