SMTL ID : 5ni3.2 (1 other biounit)

sfGFP 204-204 mutant dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: E.15, L.16, D.17, I.119 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.16, A:D.17, A:I.119, A:I.119 GOL.2: 6 residues within 4Å: Chain A: R.105, E.107, R.118, E.120 Ligands: GOL.1, GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.105, A:E.107 GOL.3: 6 residues within 4Å: Chain A: R.105, A.106, E.107, R.118, E.120 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.105, A:E.107, A:E.120 GOL.6: 6 residues within 4Å: Chain A: N.140, N.166 Chain B: V.9, D.34, T.36, N.37 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:D.34, A:N.140, A:N.166 Water bridges: B:T.7, B:D.34, B:T.36, A:N.142, A:N.142

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: R.28, E.30, K.43, I.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.30, A:E.30, A:E.30 NA.7: 2 residues within 4Å: Chain B: T.101, I.124 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.101, B:T.101 NA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.9: 2 residues within 4Å: Chain B: F.141, S.201 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.141, B:F.141

1 x DB5: [(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2,3]triazol-4-yl] hydrogen carbonate(Covalent)

DB5.5: 8 residues within 4Å: Chain A: S.198, F.200, T.221, A.223 Chain B: R.69, S.198, K.200, T.221 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:R.69, B:S.198, B:T.221, A:R.69, A:S.198, A:T.221 Hydrophobic interactions: A:T.221, A:A.223

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 2 residues within 4Å: Chain B: V.215, L.217 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pope, J.R. et al., Association of Fluorescent Protein Pairs and Its Significant Impact on Fluorescence and Energy Transfer. Adv Sci (2020)

Release Date

2018-09-12

Peptides

Green fluorescent protein: A
Green fluorescent protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Green fluorescent protein

Green fluorescent protein

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