SMTL ID : 5nib.1

Ligand complex of RORg LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 8Y5: ~{N}-[4-[2-[(3-cyanophenyl)methoxy]pyridin-3-yl]thiophen-2-yl]-2-(4-ethylsulfonylphenyl)ethanamide(Non-covalent)

8Y5.1: 22 residues within 4Å: Chain A: C.43, Q.44, L.45, L.50, W.75, C.78, H.81, L.82, M.116, R.122, M.123, R.125, A.126, V.134, F.135, F.136, F.146, L.149, I.155, I.158, F.159, H.237 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.45, A:W.75, A:L.82, A:R.122, A:A.126, A:V.134, A:F.135, A:L.149, A:I.155, A:I.158, A:I.158, A:F.159 Hydrogen bonds: A:F.135 Water bridges: A:E.137 pi-Stacking: A:F.136, A:F.146

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: C.124, Y.127, S.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.124 Water bridges: A:R.54

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: L.221, A.222, L.224, P.225, P.226 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narjes, F. et al., Potent and Orally Bioavailable Inverse Agonists of ROR gamma t Resulting from Structure-Based Design. J. Med. Chem. (2018)

Release Date

2018-08-22

Peptides

Nuclear receptor ROR-gamma: A
The tethered SRC2-2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

The tethered SRC2-2 peptide

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