- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 6 residues within 4Å:- Chain A: Y.157, N.159, S.161, C.162
- Ligands: DIO.9, DIO.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.159
NAG.5: 3 residues within 4Å:- Chain A: N.256, R.261, Q.540
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.261, A:Q.540
NAG.6: 5 residues within 4Å:- Chain A: N.353, S.360, E.361, H.364, N.405
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.353, A:E.361
- Water bridges: A:H.364
NAG.7: 5 residues within 4Å:- Chain A: N.386, A.389, I.392, E.525, M.526
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.386, A:A.389
- Water bridges: A:N.386
NAG.8: 3 residues within 4Å:- Chain A: N.471, N.474, Y.494
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:N.474
- Hydrogen bonds: A:N.471
- Water bridges: A:R.194
- 12 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)(Non-functional Binders)
DIO.9: 9 residues within 4Å:- Chain A: R.111, W.131, A.135, L.139, S.161, C.162, G.203, C.204
- Ligands: NAG.4
No protein-ligand interaction detected (PLIP)DIO.10: 4 residues within 4Å:- Chain A: V.123, I.392, E.395, N.396
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.395
DIO.11: 5 residues within 4Å:- Chain A: A.153, A.154, Y.180, S.181, P.182
No protein-ligand interaction detected (PLIP)DIO.12: 4 residues within 4Å:- Chain A: H.218, D.220, V.222, R.228
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.228
DIO.13: 2 residues within 4Å:- Chain A: E.219, D.220
No protein-ligand interaction detected (PLIP)DIO.14: 3 residues within 4Å:- Chain A: T.388, L.391, E.395
No protein-ligand interaction detected (PLIP)DIO.15: 1 residues within 4Å:- Ligands: NAG.4
No protein-ligand interaction detected (PLIP)DIO.16: 2 residues within 4Å:- Chain A: Y.157, F.158
1 PLIP interactions:1 interactions with chain A- Water bridges: A:F.158
DIO.17: 9 residues within 4Å:- Chain A: R.111, P.112, V.117, W.131, V.134, A.135, S.138, T.560, V.561
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.138
DIO.18: 4 residues within 4Å:- Chain A: R.261, H.281, E.282, G.541
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.282, A:G.541
DIO.19: 2 residues within 4Å:- Chain A: L.252, L.253
No protein-ligand interaction detected (PLIP)DIO.20: 6 residues within 4Å:- Chain A: D.12, V.13, R.16, V.18, L.45, Q.241
No protein-ligand interaction detected (PLIP)- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrovic, D. et al., Shuffling Active Site Substate Populations Affects Catalytic Activity: The Case of Glucose Oxidase. ACS Catal (2017)
- Release Date
- 2017-11-15
- Peptides
- Glucose oxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 1 x OXY: OXYGEN MOLECULE(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrovic, D. et al., Shuffling Active Site Substate Populations Affects Catalytic Activity: The Case of Glucose Oxidase. ACS Catal (2017)
- Release Date
- 2017-11-15
- Peptides
- Glucose oxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A