SMTL ID : 5nji.1

Structure of the dehydratase domain of PpsC from Mycobacterium tuberculosis in complex with C12:1-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 8Z2: ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (~{E})-dodec-2-enethioate(Non-covalent)

8Z2.1: 31 residues within 4Å: Chain A: F.60, I.62, V.67, L.68, P.69, G.70, Y.73, L.100, R.101, Q.102, M.103, L.180, Q.185, H.187, D.230, L.233, Q.234, L.236, G.237, A.242, L.245, V.262, V.263, P.264, V.265, L.286, R.292, L.293, M.315, A.316, L.318 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.60, A:L.100, A:L.180, A:A.242, A:V.262, A:P.264, A:V.265 Hydrogen bonds: A:G.70, A:L.100, A:R.101, A:R.101, A:M.103, A:P.264, A:R.292 Water bridges: A:D.99, A:R.101, A:D.230 pi-Cation interactions: A:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faille, A. et al., Insights into Substrate Modification by Dehydratases from Type I Polyketide Synthases. J. Mol. Biol. (2017)

Release Date

2017-05-31

Peptides

Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsC

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