SMTL ID : 5nju.1 (1 other biounit)

Flavivirus NS5 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: S.52, G.54, G.77, C.78, G.79, G.81, G.82, W.83, T.100, K.101, H.106, E.107, V.126, D.127, V.128, F.129, D.142, I.143 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.52, A:G.81, A:G.82, A:W.83, A:W.83, A:W.83, A:T.100, A:K.101, A:E.107, A:E.107, A:D.127, A:D.127, A:V.128, A:D.142 Water bridges: A:R.80, A:K.101, A:H.106, A:R.159

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: V.31, R.33, D.252, V.253 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatrin, C. et al., The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping. Oncotarget (2018)

Release Date

2018-01-24

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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