SMTL ID : 5njv.2 (3 other biounits)

Flavivirus NS5 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: S.53, G.55, G.78, C.79, G.80, G.82, G.83, W.84, T.101, K.102, H.107, E.108, V.127, D.128, V.129, F.130, D.143, I.144 Ligands: CL.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.53, A:G.82, A:G.83, A:W.84, A:W.84, A:T.101, A:K.102, A:H.107, A:E.108, A:E.108, A:E.108, A:D.128, A:D.128, A:V.129, A:D.143 Water bridges: A:R.54, A:D.76, A:C.79, A:R.81 Salt bridges: A:E.108, A:D.143

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: T.4, L.5 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: I.144, G.145, E.146 Ligands: SAM.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatrin, C. et al., The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping. Oncotarget (2018)

Release Date

2018-01-24

Peptides

NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NS5

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