SMTL ID : 5njw.2 (1 other biounit)

Crystal Structure of BJP-1 metallo beta-lactamase in complex with boric acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.101, D.105, H.106, H.242 Ligands: ZN.2, BO3.4, OH.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.105, A:H.106, A:H.242, OH.5 ZN.2: 6 residues within 4Å: Chain A: H.101, H.103, H.177 Ligands: ZN.1, BO3.4, OH.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.101, A:H.103, A:H.177, OH.5 ZN.3: 3 residues within 4Å: Chain A: E.158, H.172, K.229 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.158, A:E.158, A:H.172

1 x BO3: BORIC ACID(Non-covalent)

BO3.4: 9 residues within 4Å: Chain A: H.101, H.106, H.177, S.202, T.204, H.242 Ligands: ZN.1, ZN.2, OH.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.202, A:S.202

1 x OH: HYDROXIDE ION(Non-covalent)

OH.5: 8 residues within 4Å: Chain A: H.101, H.103, D.105, H.106, H.177 Ligands: ZN.1, ZN.2, BO3.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Di Pisa, F. et al., Boric acid and acetate anion binding to subclass B3 metallo-Beta-lactamase BJP-1 provides clues for mechanism of action and inhibitor design. Inorg.Chim.Acta. (2017)

Release Date

2017-09-27

Peptides

Blr6230 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Blr6230 protein

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