SMTL ID : 5nkn.1

Crystal structure of an Anticalin-colchicine complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x LOC: N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide(Non-covalent)

LOC.1: 16 residues within 4Å: Chain A: G.36, F.37, V.62, F.64, Q.65, K.66, F.67, M.69, M.75, L.90, W.102, R.126, D.128, F.130, T.132, Y.134 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.37, A:F.64, A:F.67, A:F.67, A:F.130, A:F.130 Hydrogen bonds: A:F.67, A:R.126, A:Y.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barkovskiy, M. et al., An engineered lipocalin that tightly complexes the plant poison colchicine for use as antidote and in bioanalytical applications. Biol. Chem. (2019)

Release Date

2018-04-04

Peptides

Neutrophil gelatinase-associated lipocalin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neutrophil gelatinase-associated lipocalin