SMTL ID : 5nm7.1 (1 other biounit)

Crystal structure of Burkholderia AP3 phage endolysin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

3 x GLY: GLYCINE(Non-covalent)

GLY.1: 7 residues within 4Å: Chain A: Q.46, D.54, I.56, G.58, P.59, K.60, T.61 8 PLIP interactions: 7 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:Q.46, A:D.54, A:I.56, A:G.58, A:K.60, A:T.61, A:T.61, G.1 GLY.2: 7 residues within 4Å: Chain A: Q.18, D.31, I.33, G.35, S.36, A.37, T.38 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:Q.18, A:D.31, A:G.35, A:A.37, A:T.38, A:T.38 Water bridges: G.2 GLY.3: 6 residues within 4Å: Chain A: D.79, A.83, R.86, A.208, L.211, E.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.86, A:E.212, A:E.212

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 6 residues within 4Å: Chain A: Y.158, L.161, L.173, V.200, D.201, K.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.201, A:K.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maciejewska, B. et al., Modular endolysin of Burkholderia AP3 phage has the largest lysozyme-like catalytic subunit discovered to date and no catalytic aspartate residue. Sci Rep (2017)

Release Date

2018-02-14

Peptides

Peptidoglycan-binding domain 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Peptidoglycan-binding domain 1

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