- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-2-2-2-2-4-2-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 2 x MJM: (4aS)-2-methyl-3-(4-phenoxyphenyl)-5,6,7,8-tetrahydroquinolin-4(4aH)-one(Non-covalent)
MJM.3: 15 residues within 4Å:- Chain C: A.10, F.11, L.14, I.20, W.24, S.28, G.31, I.32, I.35, L.190, H.194, S.198, F.213, D.221
- Ligands: HEM.2
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:F.11, C:L.14, C:I.20, C:W.24, C:I.32, C:I.35, C:L.190, C:L.190, C:F.213
- Hydrogen bonds: C:S.28
- pi-Stacking: C:F.213
MJM.15: 13 residues within 4Å:- Chain N: F.11, L.14, A.16, I.20, G.31, I.32, I.35, L.190, H.194, S.198, F.213, D.221
- Ligands: HEM.14
9 PLIP interactions:9 interactions with chain N- Hydrophobic interactions: N:F.11, N:L.14, N:A.16, N:I.20, N:I.32, N:I.35, N:L.190, N:F.213
- pi-Stacking: N:F.213
- 6 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.4: 14 residues within 4Å:- Chain C: W.23, Y.88, M.89, Y.96, Y.97, M.309, Q.315, F.318, W.319, V.322
- Chain F: Q.73
- Chain G: C.45, V.49
- Ligands: CDL.6
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:W.23, C:W.23, C:W.23, C:Y.96, C:Y.96, C:F.318, C:W.319, C:V.322
- Hydrogen bonds: C:Y.96
PEE.8: 16 residues within 4Å:- Chain C: L.36, M.75, I.229, M.233
- Chain D: H.199, M.203, K.206, M.210, L.214
- Chain E: Y.127, A.128, N.131, V.132, V.133, Q.135
- Chain J: D.37
10 PLIP interactions:2 interactions with chain C, 3 interactions with chain E, 4 interactions with chain D, 1 interactions with chain J- Hydrophobic interactions: C:L.36, C:I.229, E:V.132, E:V.133, D:M.210, D:L.214
- Hydrogen bonds: E:Q.135, J:D.37
- Salt bridges: D:H.199, D:K.206
PEE.11: 12 residues within 4Å:- Chain A: D.416, F.441
- Chain D: M.221
- Chain E: Y.115, T.118, T.122
- Chain J: R.16, T.18, F.21, I.25, V.26
- Ligands: CDL.5
5 PLIP interactions:3 interactions with chain J, 2 interactions with chain E- Hydrophobic interactions: J:I.25, J:V.26, E:T.118
- Hydrogen bonds: J:R.16, E:T.122
PEE.16: 17 residues within 4Å:- Chain N: W.23, Y.88, M.89, G.92, Y.96, Y.97, M.309, Q.315, F.318, W.319, V.322, L.325
- Chain Q: Q.73
- Chain R: C.45, V.49, F.53
- Ligands: CDL.18
15 PLIP interactions:2 interactions with chain R, 12 interactions with chain N, 1 interactions with chain Q- Hydrophobic interactions: R:V.49, R:F.53, N:W.23, N:W.23, N:Y.96, N:Y.96, N:F.318, N:W.319, N:W.319, N:V.322, N:V.322, N:L.325
- Hydrogen bonds: N:Y.96, N:Y.97, Q:Q.73
PEE.20: 15 residues within 4Å:- Chain N: L.36, M.75, I.229, M.233
- Chain O: H.199, M.203, K.206, M.207, M.211, L.214
- Chain P: Y.127, A.128, N.131, V.132, Q.135
9 PLIP interactions:3 interactions with chain N, 3 interactions with chain O, 3 interactions with chain P- Hydrophobic interactions: N:L.36, N:I.229, N:I.229, O:L.214, P:V.132
- Salt bridges: O:H.199, O:K.206
- Hydrogen bonds: P:N.131, P:N.131
PEE.21: 9 residues within 4Å:- Chain L: F.441
- Chain O: M.221
- Chain P: Y.115, T.118
- Chain U: R.16, T.18, F.21, A.22
- Ligands: CDL.17
3 PLIP interactions:2 interactions with chain U, 1 interactions with chain P- Hydrophobic interactions: U:A.22
- Hydrogen bonds: U:R.16, P:T.118
- 6 x CDL: CARDIOLIPIN(Non-covalent)
CDL.5: 12 residues within 4Å:- Chain A: D.331, F.335, R.435, S.438, F.441
- Chain C: M.4, K.5, N.8, D.13, H.214, I.222
- Ligands: PEE.11
8 PLIP interactions:2 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:F.335, C:I.222
- Hydrogen bonds: A:S.438, C:N.8
- Salt bridges: C:K.5, C:K.5, C:H.214, C:H.214
CDL.6: 10 residues within 4Å:- Chain C: S.21, S.22, W.23
- Chain F: Q.73
- Chain G: V.38, R.41, T.42, C.45
- Ligands: PEE.4, CDL.9
9 PLIP interactions:2 interactions with chain F, 4 interactions with chain G, 3 interactions with chain C- Hydrogen bonds: F:Q.73, F:Q.73, G:R.41, C:S.22, C:S.22, C:W.23
- Hydrophobic interactions: G:V.38
- Salt bridges: G:R.41, G:R.41
CDL.9: 22 residues within 4Å:- Chain C: S.22, N.25, L.29, M.82, K.220, L.223, G.224, L.227
- Chain D: Y.219, K.222, R.223, K.230
- Chain F: M.71, R.72, Q.73
- Chain G: P.28, H.29, G.34, N.37, V.38, R.41
- Ligands: CDL.6
13 PLIP interactions:3 interactions with chain G, 6 interactions with chain D, 1 interactions with chain F, 3 interactions with chain C- Hydrogen bonds: G:P.28, G:N.37, D:Y.219, D:Y.219, D:K.230, F:R.72, C:S.22
- Salt bridges: G:R.41, D:K.222, D:R.223, D:K.230
- Hydrophobic interactions: C:L.227, C:L.227
CDL.12: 12 residues within 4Å:- Chain N: S.22, N.25, L.29, G.224, L.227
- Chain O: Y.219, K.222, R.223
- Chain R: G.34, N.37, R.41
- Ligands: CDL.18
8 PLIP interactions:3 interactions with chain O, 3 interactions with chain N, 2 interactions with chain R- Hydrogen bonds: O:R.223, R:N.37, R:R.41
- Salt bridges: O:K.222, O:K.230
- Hydrophobic interactions: N:L.29, N:L.227, N:L.227
CDL.17: 10 residues within 4Å:- Chain L: D.332, F.335, R.435, S.438
- Chain N: N.8, I.12, D.13, H.214, I.222
- Ligands: PEE.21
6 PLIP interactions:4 interactions with chain N, 2 interactions with chain L- Hydrophobic interactions: N:I.12, N:I.222
- Salt bridges: N:K.5, N:H.214
- Hydrogen bonds: L:S.438, L:S.438
CDL.18: 11 residues within 4Å:- Chain N: S.21, S.22, W.23, F.26
- Chain Q: Q.73
- Chain R: V.38, R.41, T.42, C.45
- Ligands: CDL.12, PEE.16
8 PLIP interactions:3 interactions with chain N, 4 interactions with chain R, 1 interactions with chain Q- Hydrophobic interactions: N:F.26, R:T.42
- Hydrogen bonds: N:S.22, N:W.23, R:R.41, Q:Q.73
- Salt bridges: R:R.41, R:R.41
- 2 x HEC: HEME C(Covalent)
HEC.7: 19 residues within 4Å:- Chain D: V.31, V.35, C.36, C.39, H.40, L.108, P.109, P.110, I.115, R.119, Y.125, L.129, L.130, F.152, I.157, G.158, M.159, P.162, L.189
15 PLIP interactions:15 interactions with chain D,- Hydrophobic interactions: D:V.31, D:P.109, D:P.110, D:I.115, D:L.129, D:L.130, D:I.157, D:M.159, D:P.162, D:L.189
- Hydrogen bonds: D:Y.125, D:Y.125, D:G.158
- Salt bridges: D:R.119
- Metal complexes: D:H.40
HEC.19: 19 residues within 4Å:- Chain O: V.31, V.35, C.36, C.39, H.40, L.108, P.109, P.110, I.115, R.119, Y.125, L.129, L.130, F.152, I.157, G.158, M.159, P.162, I.163
16 PLIP interactions:16 interactions with chain O,- Hydrophobic interactions: O:V.31, O:P.109, O:P.109, O:P.110, O:I.115, O:L.129, O:L.130, O:I.157, O:M.159, O:I.163
- Hydrogen bonds: O:Y.125, O:G.158
- Salt bridges: O:R.119
- pi-Stacking: O:H.40
- pi-Cation interactions: O:H.40
- Metal complexes: O:H.40
- 1 x FES: FE2/S2 (INORGANIC) CLUSTER(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPhillie, M. et al., New paradigms for understanding and step changes in treating active and chronic, persistent apicomplexan infections. Sci Rep (2016)
- Release Date
- 2017-06-14
- Peptides
- Cytochrome b-c1 complex subunit 1, mitochondrial: AL
Cytochrome b-c1 complex subunit 2, mitochondrial: BM
Cytochrome b: CN
Cytochrome c1, heme protein, mitochondrial: DO
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EIPT
Cytochrome b-c1 complex subunit 7: FQ
Cytochrome b-c1 complex subunit 8: GR
Cytochrome b-c1 complex subunit 6, mitochondrial: HS
Cytochrome b-c1 complex subunit 9: JU
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR: KV - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AL
NB
BM
OC
CN
PD
DO
QE
EI
IP
RT
VF
FQ
SG
GR
TH
HS
UJ
JU
WK
KV
X - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-2-2-2-2-4-2-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 2 x MJM: (4aS)-2-methyl-3-(4-phenoxyphenyl)-5,6,7,8-tetrahydroquinolin-4(4aH)-one(Non-covalent)
- 6 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 6 x CDL: CARDIOLIPIN(Non-covalent)
- 2 x HEC: HEME C(Covalent)
- 1 x FES: FE2/S2 (INORGANIC) CLUSTER(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPhillie, M. et al., New paradigms for understanding and step changes in treating active and chronic, persistent apicomplexan infections. Sci Rep (2016)
- Release Date
- 2017-06-14
- Peptides
- Cytochrome b-c1 complex subunit 1, mitochondrial: AL
Cytochrome b-c1 complex subunit 2, mitochondrial: BM
Cytochrome b: CN
Cytochrome c1, heme protein, mitochondrial: DO
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EIPT
Cytochrome b-c1 complex subunit 7: FQ
Cytochrome b-c1 complex subunit 8: GR
Cytochrome b-c1 complex subunit 6, mitochondrial: HS
Cytochrome b-c1 complex subunit 9: JU
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR: KV - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AL
NB
BM
OC
CN
PD
DO
QE
EI
IP
RT
VF
FQ
SG
GR
TH
HS
UJ
JU
WK
KV
X - Membrane
-
We predict this structure to be a membrane protein.