SMTL ID : 5nmr.1

Monomeric mouse Sortilin extracellular domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: A.322, A.323, N.324, E.325, F.329, N.373, T.375, Y.381, P.449 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.325 NAG-NAG.2: 8 residues within 4Å: Chain A: D.116, Y.117, K.119, S.547, M.548, N.549, Q.619, R.622 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.116

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.129, R.163, Q.176 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.176

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: T.518, L.612, R.613, K.614, S.616 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.518, A:S.616, H2O.7, H2O.7 CA.5: 3 residues within 4Å: Chain A: D.333, E.334, G.336 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.334, A:G.336, H2O.4, H2O.5, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leloup, N. et al., Low pH-induced conformational change and dimerization of sortilin triggers endocytosed ligand release. Nat Commun (2017)

Release Date

2017-12-06

Peptides

Sortilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sortilin

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