SMTL ID : 5nmw.1 (1 other biounit)

Crystal Structure of the pyrrolizidine alkaloid N-oxygenase from Zonocerus variegatus in complex with FAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: G.8, G.10, P.11, S.12, E.31, R.32, G.38, T.39, W.40, Y.56, S.58, Y.60, L.63, V.65, N.66, M.72, H.113, H.114, V.115, C.148, T.149, G.150, T.152, F.267, Y.307, F.311 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:T.39, A:Y.60 Hydrogen bonds: A:G.10, A:S.12, A:S.12, A:S.12, A:R.32, A:T.39, A:T.39, A:W.40, A:N.66, A:V.115, A:V.115 Water bridges: A:G.13, A:G.38, A:N.66, A:N.66, A:Q.151, A:Q.151, A:Y.307, A:R.398 pi-Stacking: A:W.40, A:W.40, A:Y.56 FAD.3: 26 residues within 4Å: Chain B: G.8, G.10, P.11, S.12, E.31, R.32, G.38, T.39, W.40, Y.56, S.58, Y.60, L.63, V.65, N.66, M.72, H.113, H.114, V.115, C.148, T.149, G.150, T.152, F.267, Y.307, F.311 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:Y.60, B:L.63 Hydrogen bonds: B:S.12, B:S.12, B:R.32, B:G.38, B:T.39, B:W.40, B:N.66, B:V.115, B:V.115 Water bridges: B:G.10, B:S.12, B:N.66, B:N.66, B:N.66, B:N.66, B:T.152, B:Y.307, B:R.398 pi-Stacking: B:W.40, B:W.40

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.368, A.372 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubitza, C. et al., Crystal structure of pyrrolizidine alkaloid N-oxygenase from the grasshopper Zonocerus variegatus. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-03-14

Peptides

Flavin-containing monooxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Flavin-containing monooxygenase

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