- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x SER- GLU- SER- SER: Ser-Glu-Ser-Ser(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 2 residues within 4Å:- Chain A: A.285, K.286
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.286
GOL.3: 3 residues within 4Å:- Chain A: K.294, T.309, A.312
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.294
GOL.4: 5 residues within 4Å:- Chain A: R.549, E.552
- Chain B: D.57, Y.58, P.59
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.9, B:S.9, A:R.549
- Water bridges: B:P.55
GOL.5: 4 residues within 4Å:- Chain A: K.419, K.450, R.454
- Ligands: PO4.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.419, A:K.450, A:R.454, A:R.454
GOL.6: 1 residues within 4Å:- Chain A: E.304
No protein-ligand interaction detected (PLIP)GOL.7: 6 residues within 4Å:- Chain A: D.250, R.251
- Chain B: R.102, L.106, L.164
- Ligands: GOL.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.250
GOL.10: 3 residues within 4Å:- Chain A: P.253
- Chain B: R.102
- Ligands: GOL.7
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.102, B:Q.103
GOL.11: 6 residues within 4Å:- Chain A: D.438
- Chain B: R.89, R.92, N.125, A.127
- Ligands: CMC.17
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:D.438, B:R.89, B:R.92, B:N.125
- Water bridges: A:D.441, B:R.89, B:N.125
GOL.12: 5 residues within 4Å:- Chain A: D.526, F.527, F.530
- Chain B: K.29, Y.33
1 PLIP interactions:1 interactions with chain B- Water bridges: B:K.29
GOL.13: 5 residues within 4Å:- Chain B: R.50, A.52, D.57, Y.58, P.59
1 PLIP interactions:1 interactions with chain B- Water bridges: B:K.60
GOL.14: 3 residues within 4Å:- Chain B: Y.26, F.27, Y.30
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.27
GOL.15: 6 residues within 4Å:- Chain A: S.446, K.450, W.488
- Chain B: H.16, E.20
- Ligands: PO4.8
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:H.16, A:S.446, A:K.450
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 7 residues within 4Å:- Chain A: R.416, K.419, K.447, K.450, Y.451
- Ligands: GOL.5, GOL.15
5 PLIP interactions:5 interactions with chain A- Water bridges: A:K.419
- Salt bridges: A:R.416, A:K.419, A:K.447, A:K.450
PO4.9: 5 residues within 4Å:- Chain A: M.49, L.52, H.82, I.86, Q.113
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.82
PO4.16: 4 residues within 4Å:- Chain A: K.216, H.217, R.221
- Chain B: R.172
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.216
- Water bridges: A:R.221
- Salt bridges: A:H.217, A:R.221, B:R.172
- 1 x CMC: CARBOXYMETHYL COENZYME *A(Non-covalent)
CMC.17: 26 residues within 4Å:- Chain A: R.289
- Chain B: N.21, L.22, T.83, S.84, L.85, S.86, V.87, R.92, R.93, L.94, G.95, I.96, A.97, E.98, H.120, V.121, N.125, A.127, A.128, H.130, L.131, Y.132, T.135
- Ligands: SER-GLU-SER-SER.1, GOL.11
23 PLIP interactions:22 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.22, B:A.97, B:A.128
- Hydrogen bonds: B:L.85, B:L.85, B:V.87, B:R.92, B:R.93, B:R.93, B:R.93, B:R.93, B:L.94, B:G.95, B:I.96, B:A.97, B:E.98, B:N.125, B:H.130
- Water bridges: B:R.93
- Salt bridges: B:H.130, A:R.289
- pi-Cation interactions: B:R.93, B:R.93
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weyer, F.A. et al., Structural basis of HypK regulating N-terminal acetylation by the NatA complex. Nat Commun (2017)
- Release Date
- 2017-06-14
- Peptides
- N-terminal acetyltransferase-like protein: A
Putative uncharacterized protein: B
Putative uncharacterized protein: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x SER- GLU- SER- SER: Ser-Glu-Ser-Ser(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x CMC: CARBOXYMETHYL COENZYME *A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weyer, F.A. et al., Structural basis of HypK regulating N-terminal acetylation by the NatA complex. Nat Commun (2017)
- Release Date
- 2017-06-14
- Peptides
- N-terminal acetyltransferase-like protein: A
Putative uncharacterized protein: B
Putative uncharacterized protein: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
G