SMTL ID : 5nof.1

Anthranilate phosphoribosyltransferase from Thermococcus kodakaraensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: E.48, E.198 Ligands: ZN.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.48, A:E.198, H2O.1 ZN.2: 3 residues within 4Å: Chain A: D.78, D.217, E.218 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.78, A:D.217, A:E.218, H2O.1, H2O.1 ZN.3: 1 residues within 4Å: Chain A: E.118 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.118, A:E.118, H2O.2, H2O.2, H2O.2 ZN.4: 4 residues within 4Å: Chain A: G.47, E.48, E.198 Ligands: ZN.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.198, H2O.1, H2O.2 ZN.6: 3 residues within 4Å: Chain B: D.78, D.217, E.218 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.217, B:E.218 ZN.7: 2 residues within 4Å: Chain B: E.235, Y.289 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: I.246, R.274, D.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.278 NA.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 2 residues within 4Å: Chain B: V.62, A.147 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perveen, S. et al., Anthranilate phosphoribosyltransferase from the hyperthermophilic archaeon Thermococcus kodakarensis shows maximum activity with zinc and forms a unique dimeric structure. FEBS Open Bio (2017)

Release Date

2017-11-29

Peptides

Anthranilate phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anthranilate phosphoribosyltransferase

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