SMTL ID : 5np9.1

Crystal structure of Bacillus subtilis YdiB in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: T.8, V.9, N.10, P.11, T.14, D.36, L.37, G.38, A.39, G.40, K.41, T.42, T.43, E.106, D.130, R.132 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.8, A:T.8, A:T.14, A:G.38, A:A.39, A:G.40, A:K.41, A:T.42, A:T.42, A:T.43, A:T.43, A:R.132 Water bridges: A:K.41, A:W.107 Salt bridges: A:K.41 pi-Cation interactions: A:R.132, A:R.132

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.42, E.106 Ligands: ADP.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.42, A:E.106, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, H.A. et al., Expanding the Kinome World: A New Protein Kinase Family Widely Conserved in Bacteria. J. Mol. Biol. (2017)

Release Date

2018-05-30

Peptides

tRNA threonylcarbamoyladenosine biosynthesis protein TsaE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA threonylcarbamoyladenosine biosynthesis protein TsaE