SMTL ID : 5nq2.1

Porcine (Sus scrofa) Major Histocompatibility Complex, class I, presenting IAYERMCNI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- ALA- TYR- GLU- ARG- MET- CYS- ASN- ILE: ILE-ALA-TYR-GLU-ARG-MET-CYS-ASN-ILE(Non-covalent)

ILE-ALA-TYR-GLU-ARG-MET-CYS-ASN-ILE.1: 28 residues within 4Å: Chain A: L.6, Y.8, R.63, E.64, I.67, Q.68, D.70, N.71, T.74, F.75, V.77, N.78, T.81, Y.85, F.96, Y.100, Y.117, Y.124, T.144, K.147, W.148, E.153, Q.156, W.157, Y.160, L.164, G.168, Y.172 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:T.81, A:F.96, A:W.157, A:Y.160 Hydrogen bonds: A:Y.8, A:R.63, A:E.64, A:T.74, A:T.74, A:N.78, A:Y.100, A:Y.100, A:T.144, A:Y.160, A:Y.172, A:Y.172 Water bridges: A:Y.10, A:N.71, A:N.78, A:Y.160 Salt bridges: A:D.70, A:K.147 pi-Stacking: A:W.157, A:W.157

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: Q.227 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain B: I.37, E.38, K.84, H.85, V.86 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.38 Water bridges: B:H.85, B:H.85, B:V.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tungatt, K. et al., Induction of influenza-specific local CD8 T-cells in the respiratory tract after aerosol delivery of vaccine antigen or virus in the Babraham inbred pig. Plos Pathog. (2018)

Release Date

2018-04-25

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin