SMTL ID : 5nqp.1 (2 other biounits)

Structure of a fHbp(V1.4):PorA(P1.16) chimera. Fusion at fHbp position 151.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.111, E.145, G.237, Q.240 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.237, A:Q.240, A:Q.240 Salt bridges: A:H.111

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.40, K.42, T.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.40, A:T.51 EDO.3: 6 residues within 4Å: Chain A: I.142, H.146, V.215, S.231, G.233, A.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.231 EDO.4: 5 residues within 4Å: Chain A: S.28, L.29, T.30, A.143, G.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.28, A:G.144 EDO.5: 2 residues within 4Å: Chain A: A.203, S.204 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: D.209, K.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.209, A:K.210 EDO.7: 5 residues within 4Å: Chain A: S.229, S.231, S.245, A.246, E.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.246

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 2 residues within 4Å: Chain A: F.137, R.255 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: K.84, N.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hollingshead, S. et al., Structure-based design of chimeric antigens for multivalent protein vaccines. Nat Commun (2018)

Release Date

2018-02-28

Peptides

Factor H binding protein variant B16_001,Major outer membrane protein P.IA,Factor H binding protein variant B16_001: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Factor H binding protein variant B16_001,Major outer membrane protein P.IA,Factor H binding protein variant B16_001

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