SMTL ID : 5nqr.1

Potent inhibitors of NUDT5 silence hormone signaling in breast cancer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

3 x 958: 8-(dimethylamino)-1,3-dimethyl-7-[[5-(3-methylphenyl)-1,3,4-oxadiazol-2-yl]methyl]purine-2,6-dione(Non-covalent)

958.1: 15 residues within 4Å: Chain A: W.28, R.51, D.60, G.61, R.84, A.96, L.98, T.140, I.141 Chain B: T.45, W.46, E.47, G.135, L.136 Ligands: 958.2 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:D.60, A:A.96 Hydrogen bonds: A:R.51, A:R.51, A:R.84, A:R.84, B:E.47 pi-Stacking: A:W.28, A:W.28, A:W.28, B:W.46, B:W.46 958.2: 13 residues within 4Å: Chain A: W.28, R.51, R.84, A.96, L.98, M.132, I.141 Chain B: T.45, W.46, E.47, G.135, L.136 Ligands: 958.1 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.96, A:L.98 Hydrogen bonds: A:R.51, A:R.51, A:R.84, A:R.84, B:E.47 pi-Stacking: A:W.28, A:W.28, A:W.28, B:W.46 958.3: 13 residues within 4Å: Chain A: T.45, W.46, E.47, G.135 Chain B: W.28, R.51, D.60, G.61, A.96, G.97, L.98, I.141, E.166 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:D.60, B:A.96, B:L.98 Hydrogen bonds: B:R.51, B:R.51, A:E.47 Water bridges: B:R.84, B:R.84, B:R.84, B:R.84, B:R.84, B:L.98 pi-Stacking: B:W.28, B:W.28, B:W.28, A:W.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Page, B.D.G. et al., Targeted NUDT5 inhibitors block hormone signaling in breast cancer cells. Nat Commun (2018)

Release Date

2018-01-31

Peptides

ADP-sugar pyrophosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-sugar pyrophosphatase

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