SMTL ID : 5nro.1

Structure of full-length DnaK with bound J-domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 20 residues within 4Å: Chain A: G.10, T.11, T.12, N.13, K.70, E.171, G.196, G.197, G.198, A.199, G.229, E.267, K.270, I.271, S.274, G.341, G.342, Q.343, R.345 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:T.12, A:T.12, A:T.12, A:N.13, A:N.13, A:G.196, A:G.197, A:G.198, A:A.199, A:A.199, A:E.267, A:E.267, A:K.270, A:S.274, A:S.274, A:G.342, A:Q.343 Water bridges: A:D.8, A:D.8 Salt bridges: A:K.70

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.8, E.171 Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kityk, R. et al., Molecular Mechanism of J-Domain-Triggered ATP Hydrolysis by Hsp70 Chaperones. Mol. Cell (2018)

Release Date

2018-01-17

Peptides

Chaperone protein DnaK: A
Chaperone protein DnaJ: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chaperone protein DnaK

Chaperone protein DnaJ