SMTL ID : 5ns4.1 (1 other biounit)

Crystal structures of Cy3 cyanine fluorophores stacked onto the end of double-stranded RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: R.125, G.126, N.127, T.158, A.160 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:R.125, A:T.158, A:A.160, H2O.1 MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain B: A.21 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: A.9, C.10, C.11 No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x 96T: 3-[(2~{Z})-2-[(~{E})-3-[3,3-dimethyl-1-(3-oxidanylpropyl)indol-1-ium-2-yl]prop-2-enylidene]-3,3-dimethyl-indol-1-yl]propan-1-ol(Non-functional Binders)

96T.2: 2 residues within 4Å: Chain B: U.1, A.33 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA. Biophys. J. (2017)

Release Date

2017-12-20

Peptides

50S ribosomal protein L5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L5

Related Entries With Identical Sequence