SMTL ID : 5nsc.1

Fc DEKK heterodimer variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.1: 14 residues within 4Å: Chain A: F.26, F.28, P.29, P.30, K.31, E.43, T.45, V.47, V.49, D.50, Q.80, N.82, T.84, R.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.80, A:E.43, A:T.45 Water bridges: A:K.31, A:E.43 NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.2: 13 residues within 4Å: Chain B: F.26, F.28, P.29, P.30, K.31, E.43, T.45, V.49, D.50, Q.80, N.82, T.84, R.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.28, B:K.31, B:E.43, B:E.43, B:T.45, B:T.45, B:K.31, B:K.31

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: Q.147, N.175, T.196 Chain B: D.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.175 Water bridges: A:Q.147, A:Q.147 GOL.4: 2 residues within 4Å: Chain A: K.177 Chain B: S.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.177, A:K.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Nardis, C. et al., A new approach for generating bispecific antibodies based on a common light chain format and the stable architecture of human immunoglobulin G1. J. Biol. Chem. (2017)

Release Date

2017-07-05

Peptides

Putative uncharacterized protein DKFZp686C11235: A
Putative uncharacterized protein DKFZp686C11235: B
Fc-III peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Putative uncharacterized protein DKFZp686C11235

Putative uncharacterized protein DKFZp686C11235

Fc-III peptide

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