SMTL ID : 5nsf.1 (1 other biounit)

Structure of AzuAla

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-dimer

Ligands

2 x 96Z: (2~{S})-2-azanyl-3-(2,6-dihydroazulen-1-yl)propanoic acid(Non-covalent)

96Z.1: 15 residues within 4Å: Chain A: G.46, F.47, E.48, W.77, A.79, G.82, N.121, Y.126, I.149, Y.163, M.166, Q.167, A.170, Q.185, I.188 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.48, A:A.79, A:Y.163, A:M.166, A:Q.167, A:Q.167, A:A.170 Hydrogen bonds: A:E.48, A:Y.163, A:Q.167, A:Q.185, A:Q.185 96Z.4: 15 residues within 4Å: Chain B: G.46, F.47, E.48, W.77, A.79, G.82, N.121, Y.126, I.149, Y.163, M.166, Q.167, A.170, Q.185, I.188 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.79, B:Y.163, B:M.166, B:Q.167, B:Q.167, B:A.170 Hydrogen bonds: B:E.48, B:Y.163, B:Q.167, B:Q.185

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: D.212, G.213, E.214, Y.242 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.214

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: R.315, K.316, L.318 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:K.316, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumann, T. et al., Site-Resolved Observation of Vibrational Energy Transfer Using a Genetically Encoded Ultrafast Heater. Angew. Chem. Int. Ed. Engl. (2019)

Release Date

2019-01-16

Peptides

Tyrosine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Tyrosine--tRNA ligase

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