SMTL ID : 5nx2.1

Crystal structure of thermostabilised full-length GLP-1R in complex with a truncated peptide agonist at 3.7 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: F.61, N.63, Y.82, E.106 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.44

3 x SOG: octyl 1-thio-beta-D-glucopyranoside(Non-covalent)

SOG.3: 7 residues within 4Å: Chain A: E.119, Q.121, G.358, T.359, R.361, F.362 Ligands: SOG.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.359 Hydrogen bonds: A:Q.121, A:G.358, A:G.358, A:F.362 SOG.4: 4 residues within 4Å: Chain A: T.10, E.119, E.120 Ligands: SOG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.10, A:E.119 SOG.5: 5 residues within 4Å: Chain A: K.323, K.327, A.386, N.388, Q.391 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.323, A:K.327, A:N.388, A:Q.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jazayeri, A. et al., Crystal structure of the GLP-1 receptor bound to a peptide agonist. Nature (2017)

Release Date

2017-06-14

Peptides

Glucagon-like peptide 1 receptor: A
truncated peptide agonist: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Glucagon-like peptide 1 receptor

truncated peptide agonist