- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x SSS: N-{[5-AMINO-1-(5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZOL-4-YL]CARBONYL}-L-ASPARTIC ACID(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 5 residues within 4Å:- Chain A: T.114, Y.117, R.199, K.202, G.203
Ligand excluded by PLIPCL.3: 6 residues within 4Å:- Chain B: T.114, Y.117, R.199, K.202, G.203, F.211
Ligand excluded by PLIPCL.6: 6 residues within 4Å:- Chain C: T.114, Y.117, R.199, K.202, G.203, F.211
Ligand excluded by PLIPCL.8: 5 residues within 4Å:- Chain D: T.114, Y.117, R.199, K.202, G.203
Ligand excluded by PLIP- 1 x FUM: FUMARIC ACID(Non-covalent)
FUM.5: 13 residues within 4Å:- Chain B: S.292, S.293, A.294, M.295, K.298, N.300
- Chain C: H.89, T.114, S.115, Q.244
- Chain D: T.161, H.162
- Ligands: AMZ.7
11 PLIP interactions:4 interactions with chain B, 5 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: B:S.293, B:A.294, B:N.300, C:T.114, C:S.115, C:Q.244, C:Q.244, D:T.161
- Salt bridges: B:K.298, C:H.89, D:H.162
- 1 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)
AMZ.7: 18 residues within 4Å:- Chain B: R.23, Y.24, G.291, M.302, R.306
- Chain C: R.88, H.89, D.90, S.115, C.116, Q.244, R.332, L.334, S.337, A.338, R.341
- Chain D: H.162
- Ligands: FUM.5
17 PLIP interactions:7 interactions with chain B, 10 interactions with chain C- Hydrogen bonds: B:R.23, B:Y.24, B:Y.24, B:Y.24, C:R.88, C:H.89, C:D.90, C:Q.244, C:Q.244, C:R.332, C:S.337
- Water bridges: B:S.309, C:D.90
- Salt bridges: B:R.23, B:R.306, C:R.341
- pi-Cation interactions: C:H.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Van Laer, B. et al., Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep (2018)
- Release Date
- 2018-05-30
- Peptides
- Adenylosuccinate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x SSS: N-{[5-AMINO-1-(5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZOL-4-YL]CARBONYL}-L-ASPARTIC ACID(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x FUM: FUMARIC ACID(Non-covalent)
- 1 x AMZ: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Van Laer, B. et al., Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Sci Rep (2018)
- Release Date
- 2018-05-30
- Peptides
- Adenylosuccinate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D