SMTL ID : 5nyx.1 (2 other biounits)

human Fab fragment 5H2 against NHBA from Neisseria meningitidis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: S.7, G.8, P.9, G.10, L.11, V.12, L.18, S.19, L.20, V.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.7, A:P.9, A:S.19, A:S.19 GOL.2: 4 residues within 4Å: Chain A: S.138, K.139 Chain B: T.205, K.206 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.139, A:K.139, B:K.206 GOL.3: 12 residues within 4Å: Chain A: L.151, F.176, V.179, S.187, L.188, S.189 Chain B: Q.159, E.160, S.161, S.175, S.176, T.177 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.187, A:S.189, A:S.189, B:S.175, B:S.176, B:T.177

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: V.104, A.105 Chain B: N.31, Y.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.31, B:N.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maritan, M. et al., Structures of NHBA elucidate a broadly conserved epitope identified by a vaccine induced antibody. PLoS ONE (2018)

Release Date

2018-05-30

Peptides

HEAVY CHAIN: A
LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

HEAVY CHAIN

LIGHT CHAIN

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