- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.36 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 6 residues within 4Å:- Chain A: D.213, G.217, D.243, G.261, N.263, G.264
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.243, A:G.261, A:N.263, H2O.4
CA.4: 4 residues within 4Å:- Chain A: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.295, A:D.295, A:D.303, H2O.5, H2O.11
CA.16: 6 residues within 4Å:- Chain B: D.213, G.217, D.243, G.261, N.263, G.264
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.243, B:G.261, B:N.263, H2O.25
CA.17: 4 residues within 4Å:- Chain B: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.295, B:D.295, B:D.303, H2O.25, H2O.32
CA.28: 6 residues within 4Å:- Chain C: D.213, G.217, D.243, G.261, N.263, G.264
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.243, C:G.261, C:N.263, H2O.45
CA.29: 4 residues within 4Å:- Chain C: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.295, C:D.303, C:N.305, H2O.47, H2O.49
CA.33: 1 residues within 4Å:- Ligands: CA.43
No protein-ligand interaction detected (PLIP)CA.38: 6 residues within 4Å:- Chain D: D.213, G.217, D.243, G.261, N.263, G.264
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.243, D:G.261, D:N.263, H2O.66
CA.39: 4 residues within 4Å:- Chain D: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.295, D:D.303, D:N.305, H2O.68, H2O.70
CA.43: 1 residues within 4Å:- Ligands: CA.33
No protein-ligand interaction detected (PLIP)- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
G39.5: 13 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, R.144, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:W.98
- Hydrogen bonds: A:E.38, A:R.71
- Water bridges: A:R.71, A:R.75, A:E.197, A:R.212
- Salt bridges: A:R.37, A:R.212, A:R.287
G39.18: 13 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, R.144, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:W.98
- Hydrogen bonds: B:E.38, B:R.71, B:Y.321
- Water bridges: B:R.71, B:R.75, B:E.197, B:E.197, B:R.212
- Salt bridges: B:R.37, B:R.212, B:R.287
G39.30: 14 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, R.144, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
- Ligands: EDO.36
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:W.98
- Hydrogen bonds: C:E.38, C:R.71
- Water bridges: C:R.71, C:R.75, C:E.197, C:R.212
- Salt bridges: C:R.37, C:R.212, C:R.287
G39.40: 14 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, R.144, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
- Ligands: EDO.46
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:W.98
- Hydrogen bonds: D:E.38, D:R.71, D:Y.321
- Water bridges: D:R.71, D:R.75, D:E.197, D:R.212
- Salt bridges: D:R.37, D:R.212, D:R.287
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 2 residues within 4Å:- Chain A: K.3, N.154
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.3, A:N.154
- Water bridges: A:R.176, A:Q.227
NAG.19: 2 residues within 4Å:- Chain B: K.3, N.154
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.3, B:N.154
- Water bridges: B:R.176, B:Q.227
NAG.31: 1 residues within 4Å:- Chain C: N.7
No protein-ligand interaction detected (PLIP)NAG.32: 1 residues within 4Å:- Chain C: N.154
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.154
- Water bridges: C:K.3, C:N.154, C:Q.227
NAG.41: 1 residues within 4Å:- Chain D: N.7
No protein-ligand interaction detected (PLIP)NAG.42: 1 residues within 4Å:- Chain D: N.154
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.154
- Water bridges: D:K.3, D:N.154, D:Q.227
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 8 residues within 4Å:- Chain A: Y.19, L.46, E.47, C.48, I.82
- Chain D: N.128, G.129, I.130
Ligand excluded by PLIPEDO.8: 6 residues within 4Å:- Chain A: N.65, G.66, T.67, K.69, S.72
- Chain C: R.26
Ligand excluded by PLIPEDO.9: 4 residues within 4Å:- Chain A: V.186, L.229, E.230, Y.231
Ligand excluded by PLIPEDO.10: 2 residues within 4Å:- Chain A: R.349, P.350
Ligand excluded by PLIPEDO.11: 6 residues within 4Å:- Chain A: P.81, E.84
- Chain D: Y.89, N.90, S.91, R.92
Ligand excluded by PLIPEDO.12: 6 residues within 4Å:- Chain A: N.128, G.129
- Chain C: Y.19, L.46, E.47, C.48
Ligand excluded by PLIPEDO.13: 2 residues within 4Å:- Chain A: W.318, K.351
Ligand excluded by PLIPEDO.20: 8 residues within 4Å:- Chain B: Y.19, L.46, E.47, C.48, I.82
- Chain C: N.128, G.129, I.130
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain B: N.65, G.66, T.67, K.69, S.72
- Chain D: R.26
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain B: V.186, L.229, E.230, Y.231
Ligand excluded by PLIPEDO.23: 2 residues within 4Å:- Chain B: R.349, P.350
Ligand excluded by PLIPEDO.24: 6 residues within 4Å:- Chain B: P.81, E.84
- Chain C: Y.89, N.90, S.91, R.92
Ligand excluded by PLIPEDO.25: 6 residues within 4Å:- Chain B: N.128, G.129
- Chain D: Y.19, L.46, E.47, C.48
Ligand excluded by PLIPEDO.26: 2 residues within 4Å:- Chain B: W.318, K.351
Ligand excluded by PLIPEDO.34: 4 residues within 4Å:- Chain C: V.186, L.229, E.230, Y.231
Ligand excluded by PLIPEDO.35: 6 residues within 4Å:- Chain B: R.26
- Chain C: N.65, G.66, T.67, K.69, S.72
Ligand excluded by PLIPEDO.36: 6 residues within 4Å:- Chain C: N.141, V.142, R.144, G.164, S.166
- Ligands: G39.30
Ligand excluded by PLIPEDO.44: 4 residues within 4Å:- Chain D: V.186, L.229, E.230, Y.231
Ligand excluded by PLIPEDO.45: 6 residues within 4Å:- Chain A: R.26
- Chain D: N.65, G.66, T.67, K.69, S.72
Ligand excluded by PLIPEDO.46: 6 residues within 4Å:- Chain D: N.141, V.142, R.144, G.164, S.166
- Ligands: G39.40
Ligand excluded by PLIP- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokorna, J. et al., Kinetic, Thermodynamic, and Structural Analysis of Drug Resistance Mutations in Neuraminidase from the 2009 Pandemic Influenza Virus. Viruses (2018)
- Release Date
- 2018-07-04
- Peptides
- neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.36 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokorna, J. et al., Kinetic, Thermodynamic, and Structural Analysis of Drug Resistance Mutations in Neuraminidase from the 2009 Pandemic Influenza Virus. Viruses (2018)
- Release Date
- 2018-07-04
- Peptides
- neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B